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Fiji's Menu

The hierarchy of the Fiji's Menu is shown here, with a few words of explanation for each menu entry and links to more documentation where available. If you know about a menu entry that is in this list, but which doesn't yet have a description, please add it.

This list is generated automatically from a script that can be found in the development folder.

Plugins


  • Volume Viewer - file Volume_Viewer.jar -- java jar file
  • 3D Viewer - file ImageJ_3D_Viewer in package VIB_ -- java jar file

Plugins > Macros

  • Bulls Eye - file Bulls_Eye.txt -- macro
  • About Plugin Macros - file About_Plugin_Macros.txt -- macro
  • RGB Histogram - file RGB_Histogram.txt -- macro
  • batch convert any to tif - file batch_convert_any_to_tif.txt -- macro
  • Polygon - file Polygon_.txt -- macro

Plugins > Utilities

  • Thread killer - file Thread_Killer in package VIB_ -- java jar file
  • Record Window - file Jython.Refresh_Jython_Scripts("../scripts/Record_Window.py") in package Record_Screen -- java jar file
  • Collect Garbage - file CollectGarbage_ in package VIB_ -- java jar file IJ Robot - file IJ_Robot in package IJ_Robot -- java jar file
  • Record Desktop - file Jython.Refresh_Jython_Scripts("../scripts/Record_Desktop.py") in package Record_Screen -- java jar file
  • Close All Without Saving - file Close_All_Without_Saving.txt -- macro

Plugins > Utilities > Debugging

  • Test Java3D - file Test_Java3D in package VIB_ -- java jar file
  • Test Marching Cubes - file MC_Test in package VIB_ -- java jar file

Plugins > Examples

  • Edit LUT As Text - file Edit_LUT_As_Text.py -- jython script
  • Single Voxel in 3D - file tracing.Test_Single_Voxel in package VIB_ -- java jar file
  • random noise example - file random_noise_example.clj -- clojure script
  • list all threads - file list_all_threads.py -- jython script
  • downsample - file downsample_.js -- javascript file
  • Plasma Cloud - file Plasma_Cloud.rb -- jruby script
  • Delayed Snapshot - file Delayed_Snapshot.py -- jython script
  • Find Dimension of Raw Image - file Find_Dimension_of_Raw_Image.py -- jython script
  • Blobs Demo in Ruby - file Blobs_Demo_in_Ruby.rb -- jruby script
  • Same Slice in Multiple Images - file Same_Slice_in_Multiple_Images.rb -- jruby script
  • celsius to fahrenheit - file celsius_to_fahrenheit.clj -- clojure script
  • blend two images - file blend_two_images.clj -- clojure script
  • Anaglyph for Red Cyan glasses - file Anaglyph_for_Red_Cyan_glasses.rb -- jruby script
  • Multithreaded Image Processing - file Multithreaded_Image_Processing.clj -- clojure script
  • Fiji Logo 3D - file Fiji_Logo_3D.js -- javascript file
  • Spheres and Tubes in 3D - file customnode.Mesh_Maker in package VIB_ -- java jar file
  • Multithreaded Image Processing in Javascript - file Multithreaded_Image_Processing_in_Javascript.js -- javascript file
  • chess - file chess_.py -- jython script

Plugins > Examples > Command_Launchers

  • Command Launcher Javascript - file Command_Launcher_Javascript.js -- javascript file
  • Command Launcher Python - file Command_Launcher_Python.py -- jython script
  • Command Launcher Clojure - file Command_Launcher_Clojure.clj -- clojure script
  • Command Launcher Ruby - file Command_Launcher_Ruby.rb -- jruby script

Plugins > Examples > TrakEM2_Example_Scripts

  • T2 set all transforms to identity - file T2_set_all_transforms_to_identity.py -- jython script
  • T2 Select All - file T2_Select_All.py -- jython script
  • Measure AreaLists? - file Measure_AreaLists?.py -- jython script

Plugins > Analyze

  • Delaunay Voronoi - file Delaunay_Voronoi in package VIB_ -- java jar file
  • Tubeness - file features.Tubeness_ in package VIB_ -- java jar file
  • 2D Histogram - file util.Histogram_2D in package VIB_ -- java jar file
  • Find differences - file FindIt_ in package VIB_ -- java jar file
  • Dynamic ROI Profiler - file Dynamic_ROI_Profiler.clj -- clojure script
  • VIB Protocol - file VIB_Protocol in package VIB_ -- java jar file
  • Measure RGB - file Measure_RGB.txt -- macro
  • View5D - file view5d.View5D_ in package View5D_ -- java jar file
  • Surfaceness - file features.Surfaceness_ in package VIB_ -- java jar file
  • Compute Curvatures - file Compute_Curvatures in package VIB_ -- java jar file
  • Visual grep - file Visual_Grep in package VIB_ -- java jar file

Plugins > Feature Extraction

  • Extract SIFT Correspondences - file SIFT_ExtractPointRoi? in package mpicbg_ -- java jar file
  • Extract MOPS Correspondences - file MOPS_ExtractPointRoi? in package mpicbg_ -- java jar file

Plugins > Transform

  • TJ Embed - file TJ_Embed in package TransformJ_ -- java jar file
  • TJ Options - file TJ_Options in package TransformJ_ -- java jar file
  • Interactive Moving Least Squares - file Transform_MovingLeastSquaresMesh? in package mpicbg_ -- java jar file
  • TJ Mirror - file TJ_Mirror in package TransformJ_ -- java jar file
  • Interactive Similarity - file Transform_Similarity in package mpicbg_ -- java jar file
  • TJ Shift - file TJ_Shift in package TransformJ_ -- java jar file
  • Spline Deformation Generator - file SplineDeformationGenerator?.SplineDeformationGenerator_ in package SplineDeformationGenerator_ -- java jar file
  • Transform Virtual Stack Slices - file register_virtual_stack.Transform_Virtual_Stack_MT in package register_virtual_stack_slices -- java jar file
  • TJ Scale - file TJ_Scale in package TransformJ_ -- java jar file
  • Landmark Correspondences - file Transform_Roi in package mpicbg_ -- java jar file
  • Interactive Rigid - file Transform_Rigid in package mpicbg_ -- java jar file
  • Distortion Correction - file lenscorrection.Distortion_Correction in package TrakEM2_ -- java jar file
  • TJ Turn - file TJ_Turn in package TransformJ_ -- java jar file
  • TJ Panel - file TJ_Panel in package TransformJ_ -- java jar file
  • TJ Affine - file TJ_Affine in package TransformJ_ -- java jar file
  • Interactive Affine - file Transform_Affine in package mpicbg_ -- java jar file
  • Interactive Stack Rotation - file Stack_Rotate in package mpicbg_ -- java jar file
  • Interactive Perspective - file Transform_Perspective in package mpicbg_ -- java jar file
  • TJ Rotate - file TJ_Rotate in package TransformJ_ -- java jar file
  • TJ Crop - file TJ_Crop in package TransformJ_ -- java jar file

Plugins > Registration

  • Register Virtual Stack Slices - file register_virtual_stack.Register_Virtual_Stack_MT in package register_virtual_stack_slices -- java jar file
  • Rigid Registration - file vib.RigidRegistration_ in package VIB_ -- java jar file
  • TurboReg? - file TurboReg_ in package TurboReg_ -- java jar file
  • Moving Least Squares - file Moving_Least_Squares in package VIB_ -- java jar file
  • Align Image by line ROI - file Align_Image in package VIB_ -- java jar file
  • bUnwarpJ - file bunwarpj.bUnwarpJ_ in package bUnwarpJ_ -- java jar file
  • Linear Stack Alignment with SIFT - file SIFT_Align in package mpicbg_ -- java jar file

Plugins > Scripting

  • Refresh Javascript Scripts - file Javascript.Refresh_Javascript_Scripts in package Javascript_ -- java jar file
  • Refresh Jython Scripts - file Jython.Refresh_Jython_Scripts in package Jython_Interpreter -- java jar file
  • Refresh Javas - file fiji.scripting.java.Refresh_Javas in package Refresh_Javas -- java jar file
  • BeanShell? Interpreter - file BSH.BSH_Interpreter in package BeanShell_Interpreter -- java jar file
  • Clojure Interpreter - file Clojure.Clojure_Interpreter in package Clojure_Interpreter -- java jar file
  • Refresh BSH Scripts - file BSH.Refresh_BSH_Scripts in package BeanShell_Interpreter -- java jar file
  • Refresh JRuby Scripts - file JRuby.Refresh_JRuby_Scripts in package JRuby_Interpreter -- java jar file
  • Jython Interpreter - file Jython.Jython_Interpreter in package Jython_Interpreter -- java jar file
  • Javascript Interpreter - file Javascript.Javascript_Interpreter in package Javascript_ -- java jar file
  • Script Editor - file fiji.scripting.Script_Editor in package Script_Editor -- java jar file
  • Macro Interpreter - file CLI.CLI_ in package CLI_ -- java jar file
  • Refresh Clojure Scripts - file Clojure.Refresh_Clojure_Scripts in package Clojure_Interpreter -- java jar file
  • JRuby Interpreter - file JRuby.JRuby_Interpreter in package JRuby_Interpreter -- java jar file

Plugins > Segmentation

  • Statistical Region Merging - file SRM_ in package Statistical_Region_Merging -- java jar file
  • Simple Neurite Tracer - file tracing.Simple_Neurite_Tracer in package VIB_ -- java jar file
  • Level Sets - file levelsets.ij.LevelSet? in package level_sets -- java jar file
  • Blow/Lasso Tool - file plugin.Lasso_ in package VIB_ -- java jar file
  • Segmentation Editor - file Segmentation_Editor in package VIB_ -- java jar file

Plugins > Image5D

  • Virtual Image5D Opener - file Virtual_Image5D_Opener("") in package Image_5D -- java jar file
  • New Image5D - file New_Image5D("") in package Image_5D -- java jar file
  • Save Image5D - file Save_Image5D("") in package Image_5D -- java jar file
  • Z Project - file Z_Project("") in package Image_5D -- java jar file
  • Transfer Channel Settings - file Transfer_Channel_Settings("") in package Image_5D -- java jar file
  • Open Image5D - file Open_Image5D("") in package Image_5D -- java jar file
  • Open Series As Image5D - file Open_Series_As_Image5D("") in package Image_5D -- java jar file
  • Set Channel Display - file Set_Channel_Display("") in package Image_5D -- java jar file
  • Stack to Image5D - file Stack_to_Image5D("") in package Image_5D -- java jar file
  • Image5D to Stack - file Image5D_to_Stack("") in package Image_5D -- java jar file
  • Image5D Stack to RGB - file Image5D_Stack_to_RGB("") in package Image_5D -- java jar file
  • Set Channel Labels - file Set_Channel_Labels("") in package Image_5D -- java jar file
  • RGB to Image5D - file RGB_to_Image5D("") in package Image_5D -- java jar file
  • Hypervolume Opener - file Hypervolume_Opener("") in package Image_5D -- java jar file
  • Set Position - file Set_Position("") in package Image_5D -- java jar file
  • Make Montage - file Make_Montage("") in package Image_5D -- java jar file

Plugins > Process

  • Shape-based averaging - file Rohlfing_SBA in package VIB_ -- java jar file
  • Median (3D) - file process3d.Median_ in package VIB_ -- java jar file
  • Reslice Z - file Reslice_Z in package VIB_ -- java jar file
  • Flood Fill(3D) - file process3d.Flood_Fill in package VIB_ -- java jar file
  • Seam remover - file Seam_Remover in package VIB_ -- java jar file
  • Smooth (3D) - file process3d.Smooth_ in package VIB_ -- java jar file
  • Laplace (3D) - file process3d.Laplace_ in package VIB_ -- java jar file
  • Maximum (3D) - file process3d.Maximum_ in package VIB_ -- java jar file
  • Max (3D) - file process3d.Maximum_ in package VIB_ -- java jar file
  • Resample - file vib.Resample_ in package VIB_ -- java jar file
  • Gradient (3D) - file process3d.Gradient_ in package VIB_ -- java jar file
  • IFT (3D) - file process3d.IFT_ in package VIB_ -- java jar file
  • Fast FFT (2D/3D) - file registration3d.Fast_FourierTransform? in package registration_3d -- java jar file
  • Minimum (3D) - file process3d.Minimum_ in package VIB_ -- java jar file
  • Show label centers - file Show_Label_Centers in package VIB_ -- java jar file
  • Mask Of Nearby Points - file util.Mask_Of_Nearby_Points in package VIB_ -- java jar file
  • Rebin (3D) - file process3d.Rebin_ in package VIB_ -- java jar file
  • Erode (3D) - file process3d.Erode_ in package VIB_ -- java jar file
  • Quantile Based Normalization - file util.Quantile_Based_Normalization in package VIB_ -- java jar file
  • Show Color Surfaces - file isosurface.Show_Colour_Surfaces in package VIB_ -- java jar file
  • Particle Analyzer (3D) - file process3d.Particle_Analyzer_3D in package VIB_ -- java jar file
  • Bilateral Filter - file Bilateral_Filter in package VIB_ -- java jar file
  • Shape-Based Averaging (Experimental) - file util.RohlfingSBA in package VIB_ -- java jar file
  • Dilate (3D) - file process3d.Dilate_ in package VIB_ -- java jar file
  • Distance Transform 3D - file process3d.Distance_Transform_3D in package VIB_ -- java jar file
  • Implicit Interpolate Binary - file Implicit_Interpolate_Binary in package VIB_ -- java jar file
  • Find Connected Regions - file util.Find_Connected_Regions in package VIB_ -- java jar file
  • Replace value - file Replace_Value in package VIB_ -- java jar file
  • Triangle Algorithm - file Triangle_Algorithm in package VIB_ -- java jar file
  • Convolve (3D) - file process3d.Convolve_3d in package VIB_ -- java jar file

Plugins > Tracking

  • ToAST - file ToAST25_ in package ToAST_ -- java jar file
  • Manual Tracking - file Manual_Tracking in package Manual_Tracking -- java jar file
  • MTrack2 - file MTrack2_ in package MTrack2_ -- java jar file

Plugins > Stitching

  • 3D Stitching - file Stitching_3D in package Stitching_ -- java jar file
  • Stitch Collection of Images - file Stitch_Image_Collection in package Stitching_ -- java jar file
  • 2D Stitching - file Stitching_2D in package Stitching_ -- java jar file
  • Stitch Grid of Images - file Stitch_Image_Grid in package Stitching_ -- java jar file
  • Stitch Directory with Images (unknown configuration) - file Stitch_Image_Directory in package Stitching_ -- java jar file

Plugins > LOCI

  • Update LOCI Plugins - file loci.plugins.Updater("") in package loci_tools -- java jar file
  • Bio-Formats Exporter - file loci.plugins.LociExporter?("") in package loci_tools -- java jar file
  • Bio-Formats Importer - file loci.plugins.LociImporter?("location=[Local machine] windowless=false ") in package loci_tools -- java jar file
  • Bio-Formats Remote Importer - file loci.plugins.LociImporter?("location=[Internet]") in package loci_tools -- java jar file
  • Bio-Formats Macro Extensions - file loci.plugins.macro.LociFunctions?("") in package loci_tools -- java jar file
  • Data Browser - file loci.plugins.LociImporter?("location=[Local machine] view=[Data Browser] stack_order=[XYCZT] group_files=true use_virtual_stack=true ") in package loci_tools -- java jar file
  • Bio-Formats Windowless Importer - file loci.plugins.LociImporter?("location=[Local machine] windowless=true ") in package loci_tools -- java jar file
  • LOCI Plugins Configuration - file loci.plugins.config.LociConfig?("") in package loci_tools -- java jar file
  • Stack Slicer - file loci.plugins.Slicer("") in package loci_tools -- java jar file
  • Stack Colorizer - file loci.plugins.Colorizer("") in package loci_tools -- java jar file
  • LOCI Plugins Shortcut Window - file loci.plugins.shortcut.ShortcutPanel?("") in package loci_tools -- java jar file

Plugins > Stacks

  • Crop (3D) - file stacks.Three_Pane_Crop in package VIB_ -- java jar file
  • Average Images - file vib.Average_Images in package VIB_ -- java jar file

Plugins > Landmarks

  • Name Landmarks and Register - file landmarks.Name_Points in package VIB_ -- java jar file

Plugins > Skeleton

  • Analyze Skeleton (2D/3D) - file skeleton_analysis.AnalyzeSkeleton_ in package AnalyzeSkeleton_ -- java jar file
  • Skeletonize (2D/3D) - file Skeletonize3D_ in package Skeletonize3D_ -- java jar file

Analyze

  • 3D OC Options - file _3D_OC_Options in package 3D_Objects_Counter -- java jar file
  • Color Histogram - file ColorHistogram_ in package Color_Histogram -- java jar file
  • Color Inspector 3D - file Color_Inspector_3D in package Color_Inspector_3D -- java jar file
  • 3D Surface Plot - file Interactive_3D_Surface_Plot in package Interactive_3D_Surface_Plot -- java jar file
  • 3D Objects Counter - file _3D_objects_counter in package 3D_Objects_Counter -- java jar file

Analyze > Colocalization

  • Colocalization Threshold - file Colocalisation_Threshold in package Colocalisation_Analysis -- java jar file
  • Colocalization Test - file Colocalisation_Test in package Colocalisation_Analysis -- java jar file

Analyze > Tools

  • Sync Measure 3D - file Sync_Measure_3D("") in package Sync_Win -- java jar file
  • Sync Windows - file Sync_Windows("") in package Sync_Win -- java jar file

Analyze > Local Thickness

  • Distance Map to Distance Ridge - file Distance_Ridge("run") in package LocalThickness_ -- java jar file
  • Local Thickness to Cleaned-Up Local Thickness - file Clean_Up_Local_Thickness("run") in package LocalThickness_ -- java jar file
  • Local Thickness (complete process) - file Local_Thickness_Driver("run") in package LocalThickness_ -- java jar file
  • Distance Ridge to Local Thickness - file Local_Thickness_Parallel("run") in package LocalThickness_ -- java jar file
  • Geometry to Distance Map - file EDT_S1D("run") in package LocalThickness_ -- java jar file

Analyze > Optic Flow

  • PIV analysis - file PIV_analyser in package PIV_analyser -- java jar file
  • FlowJ - file FlowJ_ in package FlowJ_ -- java jar file

File

File > New

  • TrakEM2 (from template) - file ini.trakem2.New_Project in package TrakEM2_ -- java jar file
  • Fiji Tutorial - file fiji.Tutorial_Maker in package Tutorial_Maker -- java jar file
  • TrakEM2 (blank) - file ini.trakem2.New_Project("blank") in package TrakEM2_ -- java jar file
  • Script - file fiji.scripting.Script_Editor in package Script_Editor -- java jar file

File > Save As

  • Animated Gif ... - file io.Gif_Stack_Writer in package IO_ -- java jar file
  • PNG ... - file net.sf.ij.plugin.ImageIOSaveAsPlugin?("PNG") in package ij-ImageIO_ -- java jar file
  • Wavefront .OBJ ... - file marchingcubes.ExportMesh_ in package VIB_ -- java jar file
  • Biorad ... - file Biorad_Writer in package VIB_ -- java jar file
  • DF3 ... - file io.Save_DF3 in package IO_ -- java jar file
  • PNM ... - file net.sf.ij.plugin.ImageIOSaveAsPlugin?("PNM") in package ij-ImageIO_ -- java jar file
  • Leica SP ... - file leica.Leica_SP_Writer in package VIB_ -- java jar file
  • Nrrd ... - file io.Nrrd_Writer in package IO_ -- java jar file
  • LSS16 ... - file io.LSS16_Writer in package IO_ -- java jar file
  • AmiraMesh? ... - file AmiraMeshWriter_ in package VIB_ -- java jar file
  • Icns ... - file io.Icns_Writer in package IO_ -- java jar file
  • AmiraTable? ... - file AmiraTableWriter_ in package VIB_ -- java jar file
  • Analyze... - file Analyze_Writer in package Analyze_Reader_Writer -- java jar file
  • PDF ... - file io.PDF_Writer in package IO_ -- java jar file
  • XPM ... - file io.XPM_Writer in package IO_ -- java jar file
  • Compressed TIFF ... - file net.sf.ij.plugin.ImageIOSaveAsPlugin?("TIFF") in package ij-ImageIO_ -- java jar file
  • ICO ... - file io.ICO_Writer in package IO_ -- java jar file

File > Import

  • [ [Open [Image IO] ] ] - file net.sf.ij.plugin.ImageIOOpenPlugin?("simple") in package ij-ImageIO_ -- java jar file
  • Show LSMToolbox - file LSM_Toolbox("") in package LSM_Toolbox -- java jar file
  • TorstenRaw? GZ Reader... - file io.TorstenRaw_GZ_Reader in package IO_ -- java jar file
  • Amira as TrakEM2... - file ini.trakem2.New_Project("amira") in package TrakEM2_ -- java jar file
  • DF3... - file io.Open_DF3 in package IO_ -- java jar file
  • DM3 Reader... - file io.DM3_Reader in package IO_ -- java jar file
  • Amira... - file AmiraMeshReader_ in package VIB_ -- java jar file
  • Show Amira Surface - file isosurface.AmiraSurface? in package VIB_ -- java jar file
  • Animated Gif... - file io.Animated_Gif_Reader in package IO_ -- java jar file
  • MRC Leginon ... - file io.Open_MRC_Leginon in package IO_ -- java jar file
  • LSM... - file LSM_Reader in package LSM_Reader -- java jar file
  • Leica SP... - file leica.Leica_SP_Reader in package VIB_ -- java jar file
  • Open with preview ... - file net.sf.ij.plugin.ImageIOOpenPlugin?("preview") in package ij-ImageIO_ -- java jar file
  • IPLab Reader... - file io.IPLab_Reader in package IO_ -- java jar file
  • Extract Images From PDF... - file io.Extract_Images_From_PDF in package IO_ -- java jar file
  • Biorad... - file Biorad_Reader in package VIB_ -- java jar file
  • Nrrd ... - file io.Nrrd_Reader in package IO_ -- java jar file
  • SVG... - file io.SVG_Reader in package IO_ -- java jar file
  • TrakEM2 XML... - file ini.trakem2.Open_Project in package TrakEM2_ -- java jar file
  • Analyze... - file Analyze_Reader in package Analyze_Reader_Writer -- java jar file
  • PDF ... - file io.PDF_Viewer in package IO_ -- java jar file
  • Icns... - file io.Icns_Reader in package IO_ -- java jar file
  • LSS16... - file io.LSS16_Reader in package IO_ -- java jar file
  • ICO... - file io.ICO_Reader in package IO_ -- java jar file
  • DAT EMMENU ... - file io.Open_DAT_EMMENU in package IO_ -- java jar file

File > Open Samples

Help

  • Update Fiji - file fiji.updater.Updater("update") in package Fiji_Updater -- java jar file
  • Upload Sample Image - file fiji.util.Fiji_Uploader in package Fiji_Plugins -- java jar file
  • Report a Bug - file Bug_Submitter.Bug_Submitter in package Bug_Submitter -- java jar file
  • Fiji Wiki - file ij.plugin.BrowserLauncher?("http://pacific.mpi-cbg.de/") in package Fiji_Updater -- java jar file

Help > About Plugins

  • LSMReader... - file LSM_Reader("about") in package LSM_Reader -- java jar file
  • Sync Windows... - file Sync_Windows("about") in package Sync_Win -- java jar file
  • LOCI Plugins... - file loci.plugins.About("") in package loci_tools -- java jar file
  • Color Histogram... - file ColorHistogram_("about") in package Color_Histogram -- java jar file
  • About TrakEM2... - file ini.trakem2.utils.Utils in package TrakEM2_ -- java jar file
  • Image5D... - file I5D_about("about") in package Image_5D -- java jar file
  • Sync Measure 3D... - file Sync_Measure_3D("about") in package Sync_Win -- java jar file
  • Image IO ... - file net.sf.ij.plugin.AboutImageIO("") in package ij-ImageIO_ -- java jar file
  • LSMToolbox... - file LSM_Toolbox("about") in package LSM_Toolbox -- java jar file
  • Gray Morphology... - file GrayMorphology_("about") in package Gray_Morphology -- java jar file
  • About bUnwarpJ... - file bunwarpj.Credits in package bUnwarpJ_ -- java jar file

Image

Image > Color

  • RGB to Luminance - file util.RGB_to_Luminance in package VIB_ -- java jar file
  • RGB to CIELAB - file RGB_to_CIELAB in package VIB_ -- java jar file
  • Average Color - file Average_Color in package VIB_ -- java jar file
  • Simulate Color Blindness - file Simulate_Color_Blindness in package Daltonize_ -- java jar file

Image > Drawing

  • Radial Gradient - file fiji.drawing.Radial_Gradient in package Fiji_Plugins -- java jar file

Image > Selection

  • Make rectangular selection rounded - file fiji.selection.Rounded_Rectangle in package Fiji_Plugins -- java jar file

Image > Stacks

  • Time Stamper - file Time_Stamper in package Time_Stamper -- java jar file
  • Radial Reslice - file fiji.stacks.Radial_Reslice in package Fiji_Plugins -- java jar file
  • Dynamic Reslice - file fiji.stacks.Dynamic_Reslice in package Fiji_Plugins -- java jar file

Image > Stacks > Manipulation

  • Concatenate - file Concatenate_ in package Stack_Manipulation -- java jar file
  • Substack Maker - file Substack_Maker in package Stack_Manipulation -- java jar file
  • Grouped ZProjector - file Grouped_ZProjector in package Stack_Manipulation -- java jar file
  • Stack Inserter - file Stack_Inserter in package Stack_Manipulation -- java jar file
  • Stack Spliter - file Stack_Splitter in package Stack_Manipulation -- java jar file
  • Stack Sorter - file Stack_Sorter in package Stack_Manipulation -- java jar file
  • Stack Combiner - file Stack_Combiner in package Stack_Manipulation -- java jar file
  • Interleave - file Stack_Interleaver in package Stack_Manipulation -- java jar file
  • Stack Reverser - file Stack_Reverser in package Stack_Manipulation -- java jar file
  • Slice Keeper - file Slice_Keeper in package Stack_Manipulation -- java jar file
  • Stack Maker - file Stack_Maker in package Stack_Manipulation -- java jar file
  • Slice Remover - file Slice_Remover in package Stack_Manipulation -- java jar file
  • Deinterleave - file DeInterleave_ in package Stack_Manipulation -- java jar file

Image > Stacks > View5D

  • start viewer - file view5d.View5D_("") in package View5D_ -- java jar file

Image > Annotate

  • Arrow - file Arrow_ in package Arrow_ -- java jar file

Image > Video Editing

  • Open Video - file video2.Open_Video in package Video_Editing -- java jar file
  • Draw Roi - file video2.Draw_Roi in package Video_Editing -- java jar file
  • Duplicate Frame - file video2.Duplicate_Frame in package Video_Editing -- java jar file
  • Add Empty Frame - file video2.Add_Empty_Frame in package Video_Editing -- java jar file
  • Move Roi - file video2.Move_Roi in package Video_Editing -- java jar file
  • New Video - file video2.New_Video in package Video_Editing -- java jar file
  • Insert Stack - file video2.Insert_Stack in package Video_Editing -- java jar file
  • Make Transition - file video2.Make_Transition in package Video_Editing -- java jar file
  • Delete Frame - file video2.Delete_Frame in package Video_Editing -- java jar file

Image > Adjust

  • Auto Local Threshold - file Auto_Local_Threshold in package Auto_Threshold -- java jar file
  • Auto Threshold - file Auto_Threshold in package Auto_Threshold -- java jar file

Process

  • Calculator Plus - file Calculator_Plus in package Calculator_Plus -- java jar file
  • Multiple Image Processor - file MultipleImageProcessor? in package M_I_P -- java jar file

Process > Morphology

  • Gray Morphology - file GrayMorphology_ in package Gray_Morphology -- java jar file

Edit

Edit > Selection

  • Fill ROI holes - file Fill_holes in package VIB_ -- java jar file
  • Fit Circle to Image - file fiji.util.Circle_Fitter in package Fiji_Plugins -- java jar file

Edit > Options

  • Configure Fiji Updater - file fiji.updater.UptodateCheck?("config") in package Fiji_Updater -- java jar file

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Last-modified: 2009-11-17 (火) 16:27:34 (3168d)